Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs141648145 chr7:20643466 TA/T 1.81E-6 178 15.53 15.57 3.67 KM Plot
PAAD rs141716869 chr1:227501542 A/AG 3.22E-5 178 15.55 15.43 3.9 KM Plot
PAAD rs141821038 chr19:49340024 C/T 7.92E-13 176 16.17 12.87 1.37 KM Plot
PAAD rs142139481 chr19:41544121 T/C 1.51E-5 175 16.12 15.67 7.87 KM Plot
PAAD rs142226578 chr11:125585000 G/A 0.000108 178 16.08 14.37 5.03 KM Plot
PAAD rs142296350 chr19:49355146 C/T 1.22E-12 174 16.17 12.87 1.37 KM Plot
PAAD rs142388278 chr1:227530778 G/C 1.03E-5 175 15.55 15.65 3.9 KM Plot
PAAD rs142448599 chr19:49373036 C/A 6.19E-13 176 16.2 12.4 1.37 KM Plot
PAAD rs1425840 chr11:125616016 C/T 0.0001 178 15.95 12.2 4.1 KM Plot
PAAD rs1425842 chr11:125611640 C/T 0.0001 178 15.95 12.2 4.1 KM Plot
PAAD rs142627589 chr19:49343175 GTGTAAACCCCGTC/G 1.1E-12 175 16.17 13.13 1.37 KM Plot
PAAD rs142640435 chr2:70478797 T/TG 0 178 15.37 17.4 1.03 KM Plot
PAAD rs142688824 chr1:227295740 CAACT/C 3.2E-5 178 15.53 15.65 3.9 KM Plot
PAAD rs142731190 chr17:19989379 C/CT 7.07E-13 176 15.4 16.6 0.83 KM Plot
PAAD rs142752291 chr19:49353881 C/T 1.22E-12 174 16.17 12.87 1.37 KM Plot